Publications
2022
Gonçalves, M. F. M., Esteves, A. C., & Alves, A. (2022). Marine Fungi: Opportunities and Challenges. Encyclopedia, 2(1), 559-577.
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Tavares DSR, Tacão M, Ramalheira E, Ferreira S, Henriques I (2022). Report and comparative genomics of an NDM-5-producing Escherichia coli in a Portuguese hospital: Complex class 1 integrons as important players in blaNDM spread. Microorganisms 10(11): 2243.
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Esteves E, Mendes AK, Barros M, Figueiredo C, Andrade J, Capelo J, Novais A, Rebelo C, Soares R, Nunes A, Ferreira A, Lemos J, Duarte AS, Silva RM, Bernardino LI, Correia MJ, Esteves AC, Rosa N (2022) Population wide testing pooling strategy for SARS-CoV-2 detection 1 using saliva. PLoS ONE, 17(1): e0263033.
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Dinis LT, Jesus C, Amaral J, Gómez-Cadenas A, Correia B, Alves A, Pinto G (2022). Water deficit timing differentially affects physiological responses of grapevines infected with Lasiodiplodia theobromae. Plants 11(15): 1961.
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Pour FN, Pedrosa B, Oliveira M, Fidalgo C, Devreese B, Van Driessche G, Félix C, Rosa N, Alves A, Duarte AS, Esteves AC (2022). Unveiling the secretome of the fungal plant pathogen Neofusicoccum parvum induced by in vitro host mimicry. Journal of Fungi 8 (9): 971.
Tacão M, Laço J, Teixeira P, Henriques I (2022). CTX-M-producing bacteria isolated from a highly polluted river system in Portugal. International Journal of Emvironmental Research And Public Health 19(19): 11858.
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Hilário S, Gonçalves MFM, Fidalgo C, Tacão M, Alves A (2022). Genome analyses of two blueberry pathogens: Diaporthe amygdali CAA958 and Diaporthe eres CBS 160.32. Journal of Fungi 8: 804
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Amaral J, Valledor L, Alves A, Martín-García J, Pinto G (2022). Studying tree response to biotic stress using a multi-disciplinary approach: the pine pitch canker case study. Frontiers in Plant Science 13: 916138.
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Magalhães J, Correia MJ, Silva RM, Esteves AC, Alves A, Duarte AS (2022). Molecular techniques and target selection for the identification of Candida spp. in oral samples. Applied Sciences 12(18): 9204.
Guarnaccia V, Kraus C, Markakis E, Alves A., Armengol J., Eichmeier A., Compant S., Gramaje D. (2022). Fungal trunk diseases of fruit trees in Europe: pathogens, spread and future directions. Phytopathologia Mediterranea 61(3): 563–599.
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Teixeira P, Pinto N, Henriques I, Tacão M (2022) KPC-3-, GES-5-, and VIM-1 producing Enterobacterales isolated from urban ponds. International Journal of Environmental Research and Public Health 19 (10): 5848.
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Silva I, Alves M, Malheiro C, Silva ARR, Loureiro S, Henriques I, Gonzalez N (2022). Short-Term responses of soil microbial communities to changes in air temperature, soil moisture and UV radiation. Genes 13 (5): 850.
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Rodrigues L, Coelho E, Madeira R, Teixeira P, Henriques I, Coimbra MA (2022). Food ingredients derived from lemongrass byproduct hydrodistillation: essential oil, hydrolate, and decoction. Molecules 27 (8): 2493.
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Rocha J, Henriques I, Godmila M, Manaia CM (2022). Common and distinctive genomic features of Klebsiella pneumoniae thriving in the natural environment or in clinical settings. Scientific Reports 12: 10441.
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Reis P, Gaspar A, Alves A, Fontaine F, Rego C (2022). Response of different grapevine cultivars to infection by Lasiodiplodia theobromae and Lasiodiplodia mediterranea. Plant Disease 106(5): 1350–1357.
Reis P, Mondello V, Diniz I, Alves A, Rego C, Fontaine F (2022). Effect of the combined treatments with LC2017 and Trichoderma atroviride strain I-1237 on disease development and defense responses in vines infected by Lasiodiplodia theobromae. Agronomy 12(5): 996.
Batista E, Lopes A, Alves A (2022). How good are we at describing a new fungal species? A case study based on the family Botryosphaeriaceae (Dothideomycetes). Mycological Progress 21(3): 40.
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Alcaide EQ, Rodrigues CF, Henriques I, Hilário A (2022). Microbial associations of abyssal gorgonians and anemones (>4000 meters depth) at Clarion-Clipperton Fracture Zone. Frontiers in Microbiology 13: 828469.
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Rocha J, Ferreira C, Mil-Homens D, Busquets A, Fialho AM, Henriques I, Gomila M, Manaia CM (2022). Third generation cephalosporin-resistant Klebsiella pneumoniae thriving in patients and in wastewater: what do they have in common? BMC Genomics 23: 72.
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Teixeira P, Tacão M, Henriques I (2022). Occurrence and distribution of Carbapenem-resistant Enterobacterales and carbapenemase genes along a highly polluted hydrographic basin. Environmental Pollution 300:118958.
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Leitão F, Pinto G, Amaral J, Monteiro P, Henriques I (2022). New insights into the role of constitutive bacterial rhizobiome and phenolic compounds in two Pinus spp with contrasting susceptibility to pine pitch canker Tree Physiology tpab 119.
Santos J, Hilário S, Pinto G, Alves A (2022). Diversity and pathogenicity of pestalotioid fungi associated with blueberry plants in Portugal, with description of three novel species of Neopestalotiopsis. European Journal of Plant Pathology 162(3): 539–555.
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Hilário S, Santos L, AJL Phillips, Alves A (2022). Caveats of the Internal Transcribed Spacer region as a barcode to resolve species boundaries in Diaporthe. Fungal Biology 126(1): 54–74.
Monteiro P, Gonçalves MFM, Pinto G, Silva B, Martín-García J, Díez JJ, Alves A (2022). Three novel species of fungi associated with pine species showing needle blight-like disease symptoms. European Journal of Plant Pathology 162(1): 183–202.
Gonçalves MFM, Hilário S, van de Peer Y, Esteves AC, Alves A (2022). Genomic and metabolomic analyses of the marine fungus Emericellopsis cladophorae: insights into saltwater adaptability mechanisms and its biosynthetic potential. Journal of Fungi 8(1): 31.
Peixoto S, Loureiro S, Henriques I (2022). The impact of silver sulfide nanoparticles and silver ions in soil microbiome. Journal of Hazardous Materials 422:126793.
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Peixoto S , Oliveira JMM, Henriques I, Morgado R, Soares AMVM, Loureiro S (2022). Pollution- induced community tolerance framework - disc diffusion method to assess the impact of silver nanoparticles in soils: Potential relevance for risk assessment. Applied Soil Ecology 169:104185.